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The Formal Architecture of the Gene Ontology
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An Informal Workshop
sponsored by the
- Institute for Formal Ontology and Medical Information Science
in conjunction with:
- Department of Genetics, Faculty of Biological Science, Pharmacy and
Psychology, University
of Leipzig,
- Max Planck Institute for Evolutionary Anthropology, and
- Network of Excellence on Medical Informatics and Semantic Data
mining
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Fri., May 28, 2004, 14:00-18:00,
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Max Planck Institute for Evolutionary Anthropology, Leipzig,
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Sat., May 29,
2004, 09:30-17:30,
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Lindner Hotel, Leipzig
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Principal Speaker
Michael Ashburner
(Department
of Genetics, Cambridge University and European Bioinformatics
Institute)
Scientific Committee
- Anita Burgun,
Rennes, France
- Olivier Bodenreider,
NLM, Bethesda
- Werner Ceusters, Zonnegem, Belgium
- Bert Klagges, Leipzig
- Jacob Köhler, Bielefeld
- Anand Kumar, Leipzig (chair)
- Heinz Sass, Leipzig
- Steffen Schulze-Kremer, Hannover
- Barry Smith, Leipzig
The
workshop is designed to provide an opportunity for discussions of the
structure of the Gene Ontology and
especially of formal approaches to GO which might enhance its reliability
and also increase the degree to which its information content can be
extracted and controlled for error automatically. The goal is to make GO a
more robust ontology for purposes of data integration in the life sciences.
Program
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Friday, Max Planck Institute
for Evolutionary Anthropology, Leipzig,
Deutscher Platz
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14:00
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Michael Ashburner
The Gene Ontology
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15:45
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Coffee
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16:15
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Robert Stevens
Reconciling the Semantics of OWL and the Gene Ontology
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17:00
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Peter Robinson
Gene Ontology Analysis of 5' CpG-Island
Genes
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17:15
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Michael Schroeder
Text Retrieval Using GO
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18:00
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Dinner
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Saturday, Lindner Hotel, Leipzig,
Hans-Driesch-Strasse 27
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09:00
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Holger Michael
Ontologies for Describing Interactions Between
Biological Entities
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09:45
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Dietrich
Rebholz-Schuhmann
Multi-Word Terms in GO
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10:30
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Coffee
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11:00
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Suzanna Lewis
Open Biological Ontologies
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11:45
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Michael Bada
The Gene Ontology Annotation Tool (GOAT)
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12:30
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Lunch
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14:00
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Anita Burgun, Olivier Bodenreider, Marc Aubry,
Jean Mosser
Dependence Relationships in the Gene Ontology
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14:45
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Barry Smith
STOP!
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15:30
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Coffee
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16:00
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Ingvar Johansson
The Gene Ontology and the World
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16:45
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Anand Kumar
The Formal Architecture of the Gene Ontology: Future Prospects
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