Biomedical Ontology Integration

Barry Smith and Cornelius Rosse, “The Role of Foundational Relations in the Alignment of Biomedical Ontologies”, in M. Fieschi, et al. (eds.), Medinfo 2004, Amsterdam: IOS Press, 444–448.

Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kumar, Jane Lomax, Chris Mungall, Fabian Neuhaus, Alan Rector, Cornelius Rosse, “Relations in Biomedical Ontologies”, Genome Biology, 2005, 6 (5), R46.

Anand Kumar, Yum Lina Yip, Barry Smith, Pierre Grenon, “Bridging the Gap between Medical and Bioinformatics: An Ontological Case Study in Colon Carcinoma”, Computers in Biology and Medicine, in press.

Jean-Luc Verschelde, Mariana Casella Dos Santos, Tom Deray, Barry Smith and Werner Ceusters, “Ontology Assisted Database Integration to Support Natural Language Processing and Biomedical Data-Mining”, in Journal of Integrative Bioinformatics (on-line publication), January 2004.

Jonathan Simon, James Fielding, Mariana Dos Santos, Barry Smith, “Reference Ontologies for Biomedical Ontology Integration and Natural Language Processing”, International Journal of Medical Informatics, in press.

Werner Ceusters, Barry Smith and James Matthew Fielding, “LinkSuite™: Software Tools for Formally Robust Ontology-Based Data and Information Integration”, in Proceedings of DILS 2004 (Data Integration in the Life Sciences), (Lecture Notes in Bioinformatics, 2994), Berlin: Springer, 2004, 124–139.

James M. Fielding, Jonathan Simon, Werner Ceusters and Barry Smith, “Ontological Theory for Ontological Engineering: Biomedical Systems Information Integration”, Proceedings of the Ninth International Conference on the Principles of Knowledge Representation and Reasoning (KR2004), Whistler, BC, 2-5 June 2004, 114-120.

James M. Fielding, Jonathan Simon and Barry Smith, “Formal Ontology for Biomedical Knowledge Systems Integration”, Proceedings of EuroMISE, Prague, April 12-15, 2004, forthcoming.

Werner Ceusters, Barry Smith and Georg de Moor, “Ontology-Based Integration of Medical Coding Systems and Electronic Patient Records”, Draft, 2005.

Jonathan Simon, James Matthew Fielding and Barry Smith, “Using Philosophy to Improve the Coherence and Interoperability of Applications Ontologies: A Field Report on the Collaboration of IFOMIS and L&C”, in Gregor Büchel, Bertin Klein and Thomas Roth-Berghofer (eds.), Proceedings of the First Workshop on Philosophy and Informatics. Deutsches Forschungszentrum für künstliche Intelligenz, Cologne: 2004, 65–72.